Basic Information
Locus ID:
gene:TRIDC6AG011010
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 54714345 | 54714573 | + | gene:TRIDC6AG011010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 8,411.51 Da | 30.93 | 97.47 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 43 | 75 | 1.6E-10 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 1 | 38 | 3.1E-16 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 40 | 9.69E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 39 | 75 | 2.48E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 41 | 76 | 2.3E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 40 | 3.9E-23 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 41 | 76 | 11.376856 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 40 | 18.845818 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 51 | 71 | 2.7E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 72 | 76 | 2.7E-10 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_009607915.1 | ubiquitin, partial [Nicotiana tomentosiformis] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J3F2E9 | Polyubiquitin (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR2643_c7_g1_i1_g.9155 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG011010.