Basic Information
Locus ID:
gene:TRIDC6AG010060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Vacuolar protein sorting-associated protein 8 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 50039597 | 50053305 | - | gene:TRIDC6AG010060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 194,527.16 Da | 45.99 | 88.48 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12816 | Golgi CORVET complex core vacuolar protein 8 | 783 | 968 | 2.7E-55 | IPR025941 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 305 | 357 | 3.5E-5 | IPR024977 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1555 | 1610 | 2.4E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 584 | 9.83E-15 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 247 | 416 | 9.7E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 300 | 343 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 66.0 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1556 | 1604 | 9.45016 | IPR001841 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 10.742378 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1728 | 1745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1704 | 1726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1699 | 1745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 79 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00800.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037445370.1 | uncharacterized protein LOC119314796 isoform X1 [Triticum dicoccoides] | 0 |
| Q0P5W1 | Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus OX=10090 GN=Vps8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7US88 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG010060.