Basic Information
Locus ID:
gene:TRIDC5BG083790
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 710542762 | 710549333 | + | gene:TRIDC5BG083790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 38,815.64 Da | 26.26 | 74.17 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 71 | 355 | 8.55969E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 187 | 5.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 272 | 6.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 75 | 102 | 0.0091 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 314 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 113 | 144 | 1.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 69 | 355 | 2.5E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 28 | 198 | 5.2E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 355 | 6.8E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 234 | 272 | 3.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 63 | 102 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 355 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 314 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 188 | 2.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 144 | 1.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 112 | 144 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 323 | 355 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 197 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 112 | 144 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 70 | 111 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 323 | 355 | 10.864685 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 189 | 8.65015 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 342 | 355 | 4.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 131 | 145 | 4.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 89 | 103 | 4.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_037444752.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Triticum dicoccoides] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A453MME4 | ANAPC4_WD40 domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG083790.