Basic Information
Locus ID:
gene:TRIDC5BG082160
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 705069633 | 705080245 | + | gene:TRIDC5BG082160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 210,090.19 Da | 48.16 | 101.52 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16491 | RING-CH-C4HC3_LTN1 | 1820 | 1869 | 4.38205E-32 | IPR039804 |
| Pfam | PF13639 | Ring finger domain | 1821 | 1869 | 1.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1814 | 1872 | 5.78E-12 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 12 | 364 | 2.07E-10 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1802 | 1872 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 19 | 307 | 2.5E-8 | IPR011989 |
| SMART | SM00744 | ringv_2 | 1821 | 1869 | 0.0014 | IPR011016 |
| SMART | SM00184 | ring_2 | 1822 | 1868 | 3.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1822 | 1869 | 12.297489 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58410.2 | - | 0 |
| RefSeq | XP_037444639.1 | E3 ubiquitin-protein ligase listerin-like [Triticum dicoccoides] | 0 |
| Q9FGI1 | E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana OX=3702 GN=At5g58410 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6LXB5 | E3 ubiquitin-protein ligase listerin OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG082160.