Basic Information
Locus ID:
gene:TRIDC5BG081340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 701091818 | 701097861 | + | gene:TRIDC5BG081340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 59,796.10 Da | 60.56 | 69.81 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 223 | 540 | 1.83E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 419 | 541 | 4.0E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 164 | 418 | 6.4E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 315 | 358 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 403 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 501 | 540 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 496 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 257 | 3.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 224 | 266 | 8.971213 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 100 | - | - |
| Coils | Coil | Coil | 62 | 96 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50970.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037444578.1 | U5 small nuclear ribonucleoprotein 40 kDa protein-like [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6LY66 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG081340.