Basic Information
Locus ID:
gene:TRIDC5BG078130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
ribosomal protein L40
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 687036464 | 687046045 | - | gene:TRIDC5BG078130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 15,829.00 Da | 42.12 | 70.14 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01020 | Ribosomal L40e family | 87 | 133 | 3.3E-24 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 3 | 73 | 8.3E-27 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 3.02E-27 | IPR029071 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 85 | 135 | 3.84E-15 | IPR011332 |
| Gene3D | G3DSA:4.10.1060.50 | - | 85 | 135 | 1.9E-25 | IPR038587 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 83 | 4.3E-34 | - |
| SMART | SM00213 | ubq_7 | 1 | 72 | 4.2E-26 | IPR000626 |
| SMART | SM01377 | Ribosomal_L40e_3 | 85 | 136 | 3.9E-25 | IPR001975 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 25.748619 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 5.2E-24 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 5.2E-24 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 5.2E-24 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_044391557.1 | ubiquitin-like isoform X2 [Triticum aestivum] | 0 |
| P0CH06 | Ubiquitin-ribosomal protein eL40A fusion protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubi1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LWB0 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG078130.