Basic Information
Locus ID:
gene:TRIDC5BG072050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 652073367 | 652076225 | + | gene:TRIDC5BG072050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 45,024.46 Da | 70.00 | 59.45 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 278 | 319 | 4.082E-22 | - |
| Pfam | PF13639 | Ring finger domain | 278 | 319 | 3.1E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 38 | 1.6E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 325 | 7.73E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 325 | 6.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 278 | 318 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 278 | 319 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 99 | - | - |
| Coils | Coil | Coil | 159 | 186 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55530.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037444065.1 | E3 ubiquitin-protein ligase SIRP1-like [Triticum dicoccoides] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LW12 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG072050.