halophFGD

Basic Information

Locus ID: gene:TRIDC5BG067620

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
5B	622437638	622439945	-	gene:TRIDC5BG067620

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.24	61,385.24 Da	48.15	75.05	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	371	407	0.0046	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	251	276	0.23	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	247	545	2.47E-44	IPR036322
Gene3D	G3DSA:2.130.10.10	-	227	546	4.4E-107	IPR015943
SMART	SM00320	WD40_4	502	544	37.0	IPR001680
SMART	SM00320	WD40_4	238	277	0.2	IPR001680
SMART	SM00320	WD40_4	369	407	4.7E-6	IPR001680
SMART	SM00320	WD40_4	410	450	2.3	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	375	416	10.876051	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	1	71	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14553 (U3 small nucleolar RNA-associated protein 18)

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G14050.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_037443828.1	U3 small nucleolar RNA-associated protein 18 homolog [Triticum dicoccoides]
Swiss-Prot	Q9FMU5	U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1
TrEMBL	A0A3B6LV42	WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC5BG067620.