Basic Information
Locus ID:
gene:TRIDC5BG065810
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 610357597 | 610363589 | - | gene:TRIDC5BG065810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 61,409.23 Da | 42.70 | 83.39 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 95 | 352 | 1.01381E-140 | - |
| CDD | cd00051 | EFh | 472 | 532 | 4.55402E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 471 | 532 | 5.4E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 95 | 353 | 1.3E-73 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 401 | 461 | 6.4E-12 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 95 | 354 | 6.07E-82 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 393 | 533 | 3.75E-46 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 96 | 180 | 3.2E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 181 | 359 | 1.2E-56 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 369 | 462 | 1.5E-59 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 379 | 531 | 1.5E-59 | - |
| SMART | SM00054 | efh_1 | 400 | 428 | 1.8E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 472 | 500 | 3.1E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 506 | 534 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 436 | 464 | 5.9E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 95 | 353 | 1.5E-96 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 432 | 467 | 10.189618 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 468 | 503 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 504 | 537 | 11.947029 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 396 | 431 | 15.601326 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 95 | 353 | 46.43515 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 409 | 421 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 515 | 527 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 445 | 457 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 481 | 493 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 101 | 128 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 215 | 227 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04870.1 | calcium dependent protein kinase 1. A calcium-dependent protein kinase that can phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense. | 0 |
| RefSeq | XP_037443756.1 | calcium-dependent protein kinase 11 isoform X1 [Triticum dicoccoides] | 0 |
| Q852N6 | Calcium-dependent protein kinase 11 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK11 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453M0F4 | Calcium-dependent protein kinase 20 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG065810.