Basic Information
Locus ID:
gene:TRIDC5BG064150
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 598685083 | 598686207 | + | gene:TRIDC5BG064150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 29,398.32 Da | 56.30 | 61.31 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 137 | 197 | 4.4E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 240 | 4.5E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 132 | 3.33E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 137 | 5.1E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 195 | 241 | 5.9E-5 | - |
| SMART | SM00647 | ibrneu5 | 123 | 197 | 2.7E-7 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 47 | 268 | 16.51576 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 70 | 79 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037441961.1 | probable E3 ubiquitin-protein ligase RNF217 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A453LYH7 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG064150.