Basic Information
Locus ID:
gene:TRIDC5BG064000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
PAT1
Description:
Belongs to the GRAS family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 597967094 | 598310971 | + | gene:TRIDC5BG064000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 107,164.40 Da | 41.86 | 83.75 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07887 | Calmodulin binding protein-like | 346 | 432 | 3.8E-27 | IPR012416 |
| Pfam | PF03514 | GRAS domain family | 586 | 955 | 1.5E-120 | IPR005202 |
| Pfam | PF00069 | Protein kinase domain | 6 | 246 | 1.3E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 248 | 4.99E-55 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 3 | 270 | 5.3E-61 | - |
| SMART | SM00220 | serkin_6 | 3 | 246 | 1.0E-10 | IPR000719 |
| ProSiteProfiles | PS50985 | GRAS family profile. | 577 | 956 | 90.316864 | IPR005202 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 252 | 30.364792 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 103 | 115 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48150.1 | GRAS family transcription factor. Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. | 0 |
| RefSeq | XP_037443634.1 | uncharacterized protein LOC119312019 isoform X1 [Triticum dicoccoides] | 0 |
| Q9LDL7 | Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana OX=3702 GN=PAT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6N039 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG064000.