Basic Information
Locus ID:
gene:TRIDC5BG061260
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
cleavage stimulation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 581091153 | 581095535 | + | gene:TRIDC5BG061260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 47,316.87 Da | 34.36 | 75.55 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 122 | 434 | 3.07918E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 302 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 123 | 157 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 251 | 0.055 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 345 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 179 | 214 | 6.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 434 | 3.66E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 112 | 434 | 1.1E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 305 | 346 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 258 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 158 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 434 | 0.0034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 302 | 8.9E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 126 | 160 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 402 | 434 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 302 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 126 | 167 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 402 | 434 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 326 | 355 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 311 | 11.343905 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 333 | 347 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60940.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037443465.1 | cleavage stimulation factor subunit 50-like [Triticum dicoccoides] | 0 |
| Q8L4J2 | Cleavage stimulation factor subunit 50 OS=Arabidopsis thaliana OX=3702 GN=CSTF50 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LS37 | Cleavage stimulation factor 50 kDa subunit OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG061260.