Basic Information
Locus ID:
gene:TRIDC5BG060320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 574975216 | 575065063 | - | gene:TRIDC5BG060320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 46,573.34 Da | 34.38 | 92.12 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 181 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 199 | 234 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 60 | 90 | 6.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 22 | 278 | 1.73E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 105 | 340 | 1.3E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 104 | 1.6E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 93 | 129 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 234 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 90 | 7.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 4.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 58 | 99 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 243 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 234 | 9.889235 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 58 | 93 | 10.15287 | - |
| Hamap | MF_03056 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. | 28 | 425 | 24.569012 | IPR028884 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 433 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03110.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037443395.1 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4-like [Triticum dicoccoides] | 0 |
| Q54UI3 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 OS=Dictyostelium discoideum OX=44689 GN=wdr4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6LRU3 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG060320.