Basic Information
Locus ID:
gene:TRIDC5BG060300
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Autophagy protein 16 (ATG16)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 574658094 | 574661344 | + | gene:TRIDC5BG060300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 53,161.62 Da | 39.22 | 86.55 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 195 | 487 | 1.39773E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 195 | 231 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 447 | 0.0072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 316 | 5.3E-7 | IPR001680 |
| Pfam | PF08614 | Autophagy protein 16 (ATG16) | 21 | 141 | 2.4E-9 | IPR013923 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 191 | 482 | 1.53E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 338 | 423 | 1.9E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 178 | 337 | 6.4E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 424 | 487 | 3.1E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 359 | 397 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 7.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 356 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 316 | 6.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 447 | 0.044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 487 | 9.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 235 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 283 | 320 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 325 | 12.079106 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 303 | 317 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 434 | 448 | 2.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 303 | 317 | 2.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 218 | 232 | 2.0E-7 | IPR020472 |
| Coils | Coil | Coil | 130 | 157 | - | - |
| Coils | Coil | Coil | 41 | 78 | - | - |
| Coils | Coil | Coil | 80 | 128 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50230.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_020200651.2 | LOW QUALITY PROTEIN: autophagy-related protein 16 [Aegilops tauschii subsp. strangulata] | 0 |
| Q6NNP0 | Autophagy-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=ATG16 PE=1 SV=1 | 0 | |
| TrEMBL | U3PWS4 | Autophagy-related protein 16a OS=Triticum aestivum OX=4565 GN=ATG16a PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG060300.