Basic Information
Locus ID:
gene:TRIDC5BG060060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Beige/BEACH domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 573182701 | 573201727 | - | gene:TRIDC5BG060060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 395,416.78 Da | 43.06 | 93.63 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01201 | PH_BEACH | 2741 | 2906 | 1.93485E-26 | IPR023362 |
| CDD | cd06071 | Beach | 2942 | 3221 | 1.01495E-152 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3511 | 3545 | 0.18 | IPR001680 |
| Pfam | PF02138 | Beige/BEACH domain | 2942 | 3221 | 1.7E-116 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3305 | 3334 | 0.19 | IPR001680 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2854 | 2903 | 4.3E-8 | IPR023362 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3351 | 3383 | 0.0026 | IPR001680 |
| SUPERFAMILY | SSF48371 | ARM repeat | 170 | 546 | 1.64E-5 | IPR016024 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2741 | 2907 | 1.66E-16 | - |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1060 | 1249 | 1.24E-11 | IPR013320 |
| SUPERFAMILY | SSF81837 | BEACH domain | 2934 | 3221 | 6.28E-122 | IPR036372 |
| SUPERFAMILY | SSF48371 | ARM repeat | 561 | 992 | 4.48E-10 | IPR016024 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3275 | 3549 | 2.65E-28 | IPR036322 |
| Gene3D | G3DSA:1.25.10.10 | - | 464 | 1009 | 6.9E-9 | IPR011989 |
| Gene3D | G3DSA:2.30.29.30 | - | 2742 | 2903 | 1.7E-8 | IPR011993 |
| Gene3D | G3DSA:2.130.10.10 | - | 3304 | 3554 | 2.3E-26 | IPR015943 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2931 | 3221 | 1.7E-135 | IPR036372 |
| Gene3D | G3DSA:2.60.120.200 | - | 1055 | 1242 | 9.7E-8 | - |
| SMART | SM00320 | WD40_4 | 3507 | 3546 | 0.008 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3294 | 3335 | 0.37 | IPR001680 |
| SMART | SM01026 | Beach_2 | 2941 | 3221 | 4.6E-200 | IPR000409 |
| SMART | SM00320 | WD40_4 | 3344 | 3383 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3435 | 3473 | 81.0 | IPR001680 |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2929 | 3221 | 136.566574 | IPR000409 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3514 | 3555 | 9.230148 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3351 | 3384 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3514 | 3555 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2738 | 2904 | 29.847586 | IPR023362 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3351 | 3384 | 11.44416 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 3370 | 3384 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2695 | 2712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1951 | 1982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2695 | 2724 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03060.1 | Beige/BEACH domain ;WD domain, G-beta repeat protein. Encodes a WD/BEACH domain protein involved in cell morphogenesis. | 0 |
| RefSeq | XP_037443377.1 | protein SPIRRIG-like [Triticum dicoccoides] | 0 |
| F4HZB2 | Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LT45 | Protein SPIRRIG-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG060060.