Basic Information
Locus ID:
gene:TRIDC5BG059940
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 572254318 | 572336593 | + | gene:TRIDC5BG059940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 77,404.16 Da | 38.24 | 94.14 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 587 | 651 | 1.15545E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 439 | 506 | 3.3E-17 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 511 | 582 | 1.1E-20 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 587 | 649 | 1.4E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 368 | 433 | 2.2E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 436 | 509 | 4.35E-19 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 362 | 436 | 2.69E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 587 | 644 | 3.22E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 509 | 585 | 9.54E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 439 | 506 | 4.9E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 508 | 585 | 1.9E-30 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 360 | 438 | 1.9E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 586 | 656 | 2.9E-16 | - |
| SMART | SM00213 | ubq_7 | 585 | 656 | 5.2E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 509 | 580 | 3.7E-19 | IPR000626 |
| SMART | SM00213 | ubq_7 | 366 | 436 | 3.5E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 437 | 508 | 1.5E-15 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 509 | 584 | 23.65818 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 366 | 433 | 13.597947 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 587 | 644 | 13.881027 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 437 | 506 | 18.519186 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 519 | 539 | 1.6E-18 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 561 | 582 | 1.6E-18 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 540 | 560 | 1.6E-18 | IPR019956 |
| Coils | Coil | Coil | 203 | 234 | - | - |
| Coils | Coil | Coil | 28 | 48 | - | - |
| Coils | Coil | Coil | 158 | 192 | - | - |
| Coils | Coil | Coil | 112 | 132 | - | - |
| Coils | Coil | Coil | 289 | 316 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_037443369.1 | uncharacterized protein LOC119311771 [Triticum dicoccoides] | 0 |
| P69309 | Polyubiquitin OS=Avena fatua OX=4499 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6LT23 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG059940.