Basic Information
Locus ID:
gene:TRIDC5BG059900
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein Sb04g004280 source
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 572099920 | 572104983 | - | gene:TRIDC5BG059900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 43,931.71 Da | 57.20 | 101.55 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 290 | 356 | 1.2E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 71 | 139 | 1.3E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 140 | 207 | 9.8E-20 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 212 | 281 | 2.4E-17 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 278 | 354 | 3.11E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 210 | 272 | 1.26E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 67 | 139 | 3.94E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 139 | 207 | 2.53E-20 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 140 | 207 | 8.1E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 289 | 362 | 2.6E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 209 | 282 | 3.9E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 62 | 139 | 5.4E-19 | - |
| SMART | SM00213 | ubq_7 | 288 | 361 | 7.5E-9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 138 | 209 | 3.0E-19 | IPR000626 |
| SMART | SM00213 | ubq_7 | 69 | 137 | 7.4E-11 | IPR000626 |
| SMART | SM00213 | ubq_7 | 210 | 283 | 4.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 288 | 363 | 16.015017 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 210 | 270 | 19.934587 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 69 | 141 | 12.68338 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 138 | 207 | 20.39187 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 164 | 189 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 169 | 189 | 3.8E-16 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 190 | 211 | 3.8E-16 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 148 | 168 | 3.8E-16 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_044984710.1 | uncharacterized protein LOC123452173 [Hordeum vulgare subsp. vulgare] | 0 |
| P69309 | Polyubiquitin OS=Avena fatua OX=4499 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6LT06 | Polyubiquitin OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG059900.