Basic Information
Locus ID:
gene:TRIDC5BG059620
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Region in Clathrin and VPS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 568950315 | 568961642 | - | gene:TRIDC5BG059620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 111,639.90 Da | 40.15 | 88.79 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16462 | RING-H2_Pep3p_like | 837 | 955 | 6.21054E-15 | - |
| Pfam | PF05131 | Pep3/Vps18/deep orange family | 247 | 398 | 3.8E-38 | IPR007810 |
| Pfam | PF00637 | Region in Clathrin and VPS | 601 | 748 | 3.1E-11 | IPR000547 |
| SUPERFAMILY | SSF57850 | RING/U-box | 833 | 890 | 9.81E-7 | - |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 592 | 752 | 22.837908 | IPR000547 |
| Coils | Coil | Coil | 708 | 728 | - | - |
| Coils | Coil | Coil | 788 | 822 | - | - |
| Coils | Coil | Coil | 752 | 772 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12470.1 | zinc ion binding. | 0 |
| RefSeq | XP_037443351.1 | vacuolar sorting protein 18-like [Triticum dicoccoides] | 0 |
| F4IDS7 | Vacuolar sorting protein 18 OS=Arabidopsis thaliana OX=3702 GN=VPS18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LT00 | Pep3_Vps18 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG059620.