Basic Information
Locus ID:
gene:TRIDC5BG058140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Rhomboid family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 556521218 | 556526902 | + | gene:TRIDC5BG058140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 44,079.07 Da | 41.37 | 99.95 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14287 | UBA_At3g58460_like | 363 | 397 | 9.60042E-12 | - |
| Pfam | PF00627 | UBA/TS-N domain | 363 | 396 | 7.4E-8 | IPR015940 |
| Pfam | PF01694 | Rhomboid family | 60 | 213 | 7.5E-25 | IPR022764 |
| SUPERFAMILY | SSF46934 | UBA-like | 349 | 399 | 3.16E-11 | IPR009060 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 20 | 215 | 1.7E-32 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 16 | 213 | 1.3E-30 | IPR035952 |
| Gene3D | G3DSA:1.10.8.10 | - | 335 | 401 | 2.4E-18 | - |
| SMART | SM00165 | uba_6 | 361 | 398 | 3.9E-7 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 360 | 399 | 13.462584 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 295 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58460.1 | RHOMBOID-like protein 15. | 0 |
| RefSeq | XP_037443217.1 | rhomboid-like protein 15 isoform X1 [Triticum dicoccoides] | 0 |
| Q8LB17 | Rhomboid-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=RBL15 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6LR96 | UBA domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG058140.