Basic Information
Locus ID:
gene:TRIDC5BG057020
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 548811041 | 548812545 | + | gene:TRIDC5BG057020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 56,166.66 Da | 51.16 | 66.95 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 159 | 223 | 6.7E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 244 | 288 | 7.1E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 242 | 298 | 2.18E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 160 | 230 | 3.53E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 168 | 5.59E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 173 | 9.8E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 219 | 476 | 1.5E-75 | - |
| SMART | SM00647 | ibrneu5 | 231 | 294 | 0.011 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 159 | 223 | 6.5E-17 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 86 | 298 | 40.875458 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 90 | 136 | 8.638745 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 272 | 281 | - | IPR017907 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_037438744.1 | probable E3 ubiquitin-protein ligase ARI5 [Triticum dicoccoides] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LSB0 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG057020.