Basic Information
Locus ID:
gene:TRIDC5BG056970
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 548539695 | 548547577 | + | gene:TRIDC5BG056970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 67,811.87 Da | 45.40 | 70.32 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08145 | BOP1NT (NUC169) domain | 83 | 339 | 6.0E-101 | IPR012953 |
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 377 | 3.0E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 304 | 585 | 6.41E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 596 | 1.8E-95 | IPR015943 |
| SMART | SM01035 | BOP1NT_2 | 83 | 339 | 1.7E-134 | IPR012953 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 8.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 544 | 583 | 0.0099 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 387 | 16.85791 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 346 | 383 | 12.947401 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 365 | 379 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| Coils | Coil | Coil | 591 | 596 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40360.2 | - | 0 |
| RefSeq | XP_037443140.1 | ribosome biogenesis protein BOP1 homolog [Triticum dicoccoides] | 0 |
| Q0D6V7 | Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BOP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LSA2 | Ribosome biogenesis protein BOP1 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG056970.