Basic Information
Locus ID:
gene:TRIDC5BG052220
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 516591700 | 516592308 | - | gene:TRIDC5BG052220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 19,680.92 Da | 50.36 | 82.27 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 105 | 148 | 2.17023E-20 | - |
| Pfam | PF13639 | Ring finger domain | 104 | 148 | 4.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 154 | 3.26E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 156 | 7.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 105 | 147 | 4.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 105 | 148 | 12.415513 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57750.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037438249.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Triticum dicoccoides] | 0 |
| Q9FHG8 | Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana OX=3702 GN=ATL50 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453LG82 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG052220.