Basic Information
Locus ID:
gene:TRIDC5BG050880
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 507499802 | 507507617 | - | gene:TRIDC5BG050880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 31,845.73 Da | 43.71 | 73.78 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 38 | 288 | 1.44018E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 154 | 1.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 238 | 5.0E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 77 | 112 | 5.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 38 | 70 | 8.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 196 | 3.2E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 288 | 2.12E-75 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 118 | 198 | 6.0E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 18 | 117 | 3.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 290 | 7.3E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 115 | 154 | 4.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 31 | 70 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 6.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 112 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 3.8E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 163 | 16.390055 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 38 | 70 | 12.657402 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 38 | 70 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 122 | 159 | 12.551949 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 80 | 114 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 80 | 121 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 205 | 17.091837 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 247 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 201 | 13.369217 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 241 | 12.209223 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 183 | 197 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 225 | 239 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 141 | 155 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 57 | 71 | 4.1E-10 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 141 | 155 | 4.1E-10 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 225 | 239 | 4.1E-10 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25150.2 | - | 0 |
| RefSeq | XP_044389834.1 | transcription initiation factor TFIID subunit 5-like isoform X2 [Triticum aestivum] | 0 |
| Q6S7B0 | Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana OX=3702 GN=TAF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453LEC7 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG050880.