Basic Information
Locus ID:
gene:TRIDC5BG050810
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 506990030 | 506993135 | - | gene:TRIDC5BG050810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 50,421.21 Da | 42.10 | 95.71 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16453 | RING-Ubox | 79 | 117 | 8.75887E-8 | - |
| Pfam | PF04564 | U-box domain | 79 | 143 | 7.2E-11 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 174 | 373 | 2.97E-7 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 70 | 145 | 1.2E-16 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 164 | 385 | 1.3E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 150 | 2.2E-15 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 79 | 138 | 8.1E-8 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 72 | 145 | 15.490587 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18320.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037442784.1 | U-box domain-containing protein 73-like [Triticum dicoccoides] | 0 |
| Q6K762 | U-box domain-containing protein 73 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB73 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LR28 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG050810.