Basic Information
Locus ID:
gene:TRIDC5BG050300
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
UBX domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 501629299 | 501636110 | - | gene:TRIDC5BG050300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 61,351.21 Da | 63.37 | 66.75 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 475 | 549 | 1.65072E-18 | - |
| CDD | cd14351 | UBA_Ubx1_like | 6 | 42 | 3.63968E-14 | - |
| Pfam | PF00789 | UBX domain | 470 | 549 | 5.0E-17 | IPR001012 |
| Pfam | PF14555 | UBA-like domain | 6 | 47 | 5.8E-13 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 433 | 550 | 1.21E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 1 | 44 | 3.83E-7 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 470 | 551 | 4.8E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1 | 49 | 4.4E-8 | - |
| SMART | SM00166 | ubx_3 | 466 | 550 | 4.2E-9 | IPR001012 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 469 | 547 | 18.894012 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 326 | - | - |
| Coils | Coil | Coil | 399 | 461 | - | - |
| Coils | Coil | Coil | 207 | 231 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11740.1 | Ubiquitin-like superfamily protein. Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein. | 0 |
| RefSeq | XP_037442747.1 | plant UBX domain-containing protein 8-like [Triticum dicoccoides] | 0 |
| F4JPR7 | Plant UBX domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=PUX8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LQQ1 | UBX domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG050300.