Basic Information
Locus ID:
gene:TRIDC5BG049660
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 497043523 | 497053179 | + | gene:TRIDC5BG049660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 103,181.02 Da | 58.95 | 70.75 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 136 | 191 | 1.35E-11 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 22 | 84 | 1.22E-11 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 210 | 8.5E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 103 | 4.1E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 141 | 187 | 8.9E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 31 | 78 | 9.8E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 189 | 8.9382 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 29 | 80 | 8.680099 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 307 | - | - |
| Coils | Coil | Coil | 183 | 203 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16680.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_037442713.1 | uncharacterized protein LOC119311185 isoform X1 [Triticum dicoccoides] | 0 |
| F4KE59 | Protein PARALOG OF AIPP2 OS=Arabidopsis thaliana OX=3702 GN=PAIPP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LP33 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG049660.