Basic Information
Locus ID:
gene:TRIDC5BG048060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 484206316 | 484215718 | + | gene:TRIDC5BG048060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 83,414.37 Da | 43.00 | 87.38 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 2 | 147 | 3.05591E-34 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 671 | 712 | 3.87174E-24 | - |
| Pfam | PF00069 | Protein kinase domain | 380 | 583 | 1.6E-40 | IPR000719 |
| Pfam | PF04564 | U-box domain | 667 | 736 | 1.1E-18 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 354 | 635 | 2.7E-64 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 653 | 735 | 5.39E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 451 | 647 | 3.0E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 354 | 450 | 4.4E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 666 | 739 | 2.9E-28 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 112 | 2.4E-5 | IPR014729 |
| SMART | SM00220 | serkin_6 | 376 | 645 | 3.0E-25 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 670 | 733 | 2.4E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 666 | 739 | 37.2687 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 376 | 645 | 32.668636 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 496 | 508 | - | IPR008271 |
| Coils | Coil | Coil | 327 | 347 | - | - |
| Coils | Coil | Coil | 278 | 298 | - | - |
| Coils | Coil | Coil | 222 | 242 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_037442601.1 | U-box domain-containing protein 33-like [Triticum dicoccoides] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6LPW4 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG048060.