Basic Information
Locus ID:
gene:TRIDC5BG047980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 484044383 | 484053203 | - | gene:TRIDC5BG047980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 76,903.76 Da | 62.20 | 53.40 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 150 | 431 | 4.68164E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 401 | 431 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 346 | 2.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 388 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 186 | 219 | 0.0068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 231 | 262 | 9.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 304 | 1.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 144 | 431 | 1.07E-74 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 136 | 304 | 5.4E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 305 | 440 | 8.2E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 134 | 178 | 0.0093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 262 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 6.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 432 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 304 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 389 | 1.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 220 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 356 | 388 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 313 | 16.022453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 400 | 431 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 230 | 262 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 400 | 431 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 178 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 349 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 188 | 220 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 356 | 388 | 9.151057 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 309 | 11.945589 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 271 | 10.942887 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 291 | 305 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 72 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13480.3 | - | 0 |
| RefSeq | XP_037442598.1 | flowering time control protein FY-like [Triticum dicoccoides] | 0 |
| Q6NLV4 | Flowering time control protein FY OS=Arabidopsis thaliana OX=3702 GN=FY PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LPZ3 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG047980.