Basic Information
Locus ID:
gene:TRIDC5BG046410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
UBP2
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 473935855 | 473940710 | - | gene:TRIDC5BG046410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 111,304.89 Da | 49.73 | 66.39 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 70 | 168 | 6.9E-15 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 208 | 1021 | 2.6E-46 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 167 | 3.77E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 204 | 1023 | 5.49E-80 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 754 | 1026 | 9.3E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 394 | 2.6E-38 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 180 | 6.7E-18 | IPR013083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 207 | 1024 | 41.076035 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 96 | 169 | 14.2103 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 956 | 973 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 208 | 223 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 406 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037442510.1 | ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 [Triticum dicoccoides] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6LPN3 | ubiquitinyl hydrolase 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG046410.