Basic Information
Locus ID:
gene:TRIDC5BG046210
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 473075394 | 473080010 | - | gene:TRIDC5BG046210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.32 | 26,158.21 Da | 74.77 | 64.44 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 183 | 220 | 5.5E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 227 | 8.73E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 235 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 183 | 220 | 8.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 221 | 12.725326 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 198 | 207 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.4 | - | 0 |
| RefSeq | XP_037442503.1 | uncharacterized protein LOC119310977 isoform X3 [Triticum dicoccoides] | 0 |
| Q9QZS2 | E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LPL8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG046210.