Basic Information
Locus ID:
gene:TRIDC5BG043300
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase UPL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 452708612 | 452714581 | - | gene:TRIDC5BG043300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 94,995.55 Da | 50.17 | 91.59 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 489 | 846 | 1.06823E-105 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 539 | 840 | 1.3E-66 | IPR000569 |
| Pfam | PF00240 | Ubiquitin family | 55 | 123 | 4.9E-8 | IPR000626 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 487 | 834 | 9.94E-92 | IPR035983 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 42 | 131 | 2.32E-13 | IPR029071 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 731 | 847 | 6.4E-31 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 492 | 711 | 2.7E-52 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 610 | 690 | 2.7E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 41 | 123 | 1.5E-7 | - |
| SMART | SM00119 | hect_3 | 508 | 846 | 3.8E-76 | IPR000569 |
| SMART | SM00213 | ubq_7 | 52 | 121 | 1.9E-6 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 52 | 125 | 12.16077 | IPR000626 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 510 | 848 | 65.930305 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12570.1 | ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves. | 0 |
| RefSeq | XP_044389287.1 | E3 ubiquitin-protein ligase UPL5-like [Triticum aestivum] | 0 |
| Q9SU29 | E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LP42 | E3 ubiquitin-protein ligase UPL5 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG043300.