Basic Information
Locus ID:
gene:TRIDC5BG043240
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ribosomal_L40e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 452428586 | 452432667 | + | gene:TRIDC5BG043240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.86 | 15,680.18 Da | 34.19 | 95.29 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 1 | 70 | 1.34239E-49 | - |
| Pfam | PF01020 | Ribosomal L40e family | 87 | 113 | 7.6E-8 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 6.7E-32 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 1.73E-32 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 84 | 3.4E-45 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 85 | 126 | 1.1E-5 | IPR038587 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 1.1E-32 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 28.818951 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 1.0E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 1.0E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 1.0E-37 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_037442311.1 | ubiquitin-like [Triticum dicoccoides] | 0 |
| B9DHA6 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1 | 0 | |
| TrEMBL | A0A453L3V9 | Ubiquitin-like domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG043240.