Basic Information
Locus ID:
gene:TRIDC5BG042000
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 444290796 | 444291701 | - | gene:TRIDC5BG042000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 17,229.84 Da | 61.84 | 99.07 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 94 | 136 | 3.26012E-16 | - |
| Pfam | PF13639 | Ring finger domain | 93 | 136 | 9.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 142 | 3.31E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 143 | 2.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 94 | 135 | 2.9E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 93 | 136 | 1.6E-4 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 136 | 12.931868 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_037442128.1 | probable E3 ubiquitin-protein ligase XERICO [Triticum dicoccoides] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LM23 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG042000.