Basic Information
Locus ID:
gene:TRIDC5BG040600
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 432726804 | 432739165 | - | gene:TRIDC5BG040600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 65,335.29 Da | 50.15 | 68.50 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 6 | 43 | 1.9E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 220 | 522 | 3.3E-47 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 216 | 527 | 3.19E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 5 | 46 | 3.84E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 213 | 534 | 1.5E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 1 | 48 | 1.0E-10 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 220 | 525 | 50.417461 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 6 | 43 | 11.438468 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 6 | 43 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 72 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037441530.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Triticum dicoccoides] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LNI6 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG040600.