Basic Information
Locus ID:
gene:TRIDC5BG037790
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 408458256 | 408462569 | - | gene:TRIDC5BG037790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 47,657.39 Da | 46.39 | 69.20 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 302 | 351 | 8.4E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 297 | 5.46E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 356 | 2.22E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 95 | 2.24E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 362 | 425 | 1.1E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 349 | 426 | 1.2E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 212 | 300 | 3.0E-23 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 105 | 5.4E-6 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 287 | 351 | 2.6E-12 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 361 | 423 | 0.055 | IPR002867 |
| SMART | SM00184 | ring_2 | 381 | 423 | 0.61 | IPR001841 |
| SMART | SM00184 | ring_2 | 218 | 265 | 0.78 | IPR001841 |
| SMART | SM00184 | ring_2 | 140 | 199 | 12.0 | IPR001841 |
| SMART | SM00184 | ring_2 | 39 | 85 | 0.36 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 214 | 427 | 25.541348 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 39 | 84 | 8.845287 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 218 | 263 | 9.937009 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 236 | 245 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037437997.1 | E3 ubiquitin-protein ligase RNF19B-like [Triticum dicoccoides] | 0 |
| F4ITM1 | E3 ubiquitin-protein ligase RSL1 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LMP2 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG037790.