Basic Information
Locus ID:
gene:TRIDC5BG037780
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 408365890 | 408453102 | - | gene:TRIDC5BG037780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 41,548.49 Da | 48.55 | 73.94 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 279 | 332 | 1.2E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 273 | 8.99E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 337 | 9.18E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 380 | 1.06E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 330 | 381 | 2.2E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 276 | 5.2E-23 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 264 | 332 | 5.4E-14 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 195 | 240 | 10.04028 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 191 | 381 | 25.524284 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 213 | 222 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 107 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037437995.1 | E3 ubiquitin-protein ligase RNF144A-like [Triticum dicoccoides] | 0 |
| Q8TC41 | E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=1 SV=4 | 0 | |
| TrEMBL | A0A3B6LMW4 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG037780.