Basic Information
Locus ID:
gene:TRIDC5BG037770
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 408356388 | 408359629 | - | gene:TRIDC5BG037770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 32,929.71 Da | 60.53 | 61.77 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 165 | 215 | 1.6E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 161 | 1.77E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 288 | 1.36E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 218 | 3.88E-7 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 216 | 289 | 8.3E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 165 | 4.2E-21 | IPR013083 |
| Gene3D | G3DSA:2.20.25.20 | - | 168 | 215 | 3.4E-5 | - |
| SMART | SM00184 | ring_2 | 245 | 287 | 6.4 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 152 | 215 | 2.5E-11 | IPR002867 |
| SMART | SM00184 | ring_2 | 83 | 132 | 0.023 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 225 | 287 | 0.45 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 79 | 289 | 25.016703 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 128 | 10.571388 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 101 | 110 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 64 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037441523.1 | probable E3 ubiquitin-protein ligase RNF144A-B isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6LMN1 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG037770.