Basic Information
Locus ID:
gene:TRIDC5BG035980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 394028648 | 394032213 | + | gene:TRIDC5BG035980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 110,966.07 Da | 42.57 | 101.48 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 324 | 346 | 0.33 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 862 | 1003 | 1.3E-25 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 157 | 216 | 1.3E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 252 | 309 | 5.1E-8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 196 | 539 | 2.12E-65 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 84 | 248 | 1.22E-30 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 843 | 1007 | 3.42E-44 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 471 | 755 | 3.06E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 298 | 469 | 1.1E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 817 | 929 | 4.1E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 789 | 4.3E-87 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 155 | 1.1E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 297 | 1.1E-16 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 930 | 1022 | 1.9E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 156 | 227 | 3.5E-19 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 636 | 659 | 6.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 394 | 418 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 274 | 298 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 442 | 466 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 203 | 226 | 40.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 858 | 1024 | 1.7E-7 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 588 | 612 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 709 | 733 | 40.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 858 | 1029 | 26.22353 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 975 | 987 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 864 | 886 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 206 | 219 | 1.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 709 | 722 | 1.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_044401295.1 | leucine-rich repeat receptor-like protein kinase PEPR2 [Triticum aestivum] | 0 |
| Q9SSL9 | Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana OX=3702 GN=PEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LMG6 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG035980.