Basic Information
Locus ID:
gene:TRIDC5BG034970
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 385470717 | 385475904 | + | gene:TRIDC5BG034970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 44,673.56 Da | 55.62 | 87.33 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 29 | 102 | 1.44653E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 193 | 230 | 8.2E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 32 | 104 | 1.6E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 374 | 410 | 4.5E-8 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 293 | 349 | 3.1E-20 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 352 | 421 | 7.09E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 289 | 355 | 7.19E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 177 | 236 | 1.4E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 29 | 121 | 1.34E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 282 | 349 | 1.1E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 185 | 235 | 3.9E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 367 | 414 | 1.0E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 26 | 107 | 1.7E-26 | - |
| SMART | SM00727 | CBM | 291 | 334 | 1.0E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 29 | 103 | 1.7E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 375 | 412 | 4.6E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 192 | 232 | 1.8E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 29 | 417 | 2.6E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 190 | 233 | 12.185437 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 373 | 413 | 13.028836 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 29 | 107 | 20.478973 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 386 | 400 | 3.5E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 319 | 341 | 3.5E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 401 | 416 | 3.5E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 369 | 385 | 3.5E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 268 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_037441274.1 | probable ubiquitin receptor RAD23 isoform X1 [Triticum dicoccoides] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6LLY1 | Ubiquitin receptor RAD23 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG034970.