Basic Information
Locus ID:
gene:TRIDC5BG034320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 374383915 | 374385712 | - | gene:TRIDC5BG034320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 58,711.15 Da | 58.52 | 87.22 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16453 | RING-Ubox | 58 | 86 | 2.33061E-11 | - |
| Pfam | PF04564 | U-box domain | 53 | 118 | 5.6E-13 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 45 | 126 | 2.74E-18 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 210 | 435 | 8.23E-26 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 218 | 357 | 7.0E-21 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 358 | 494 | 9.7E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 126 | 1.7E-16 | IPR013083 |
| SMART | SM00185 | arm_5 | 247 | 288 | 100.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 56 | 116 | 1.2E-11 | IPR003613 |
| SMART | SM00185 | arm_5 | 332 | 374 | 0.03 | IPR000225 |
| SMART | SM00185 | arm_5 | 289 | 331 | 0.028 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 300 | 339 | 13.5274 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 343 | 387 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 52 | 123 | 16.808596 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 189 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65200.1 | plant U-box 38. Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_037441207.1 | U-box domain-containing protein 39-like [Triticum dicoccoides] | 0 |
| Q9FJP6 | U-box domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=PUB38 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LLX5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG034320.