Basic Information
Locus ID:
gene:TRIDC5BG033400
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 364989796 | 364994007 | + | gene:TRIDC5BG033400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 70,889.22 Da | 55.77 | 69.55 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 582 | 621 | 1.18436E-7 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 580 | 627 | 1.6E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 581 | 628 | 6.28E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 558 | 633 | 1.9E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 582 | 622 | 9.376395 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| Coils | Coil | Coil | 291 | 326 | - | - |
| Coils | Coil | Coil | 503 | 530 | - | - |
| Coils | Coil | Coil | 418 | 466 | - | - |
| Coils | Coil | Coil | 369 | 410 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35330.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037441139.1 | MND1-interacting protein 1-like [Triticum dicoccoides] | 0 |
| Q8RX22 | MND1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LLR8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG033400.