Basic Information
Locus ID:
gene:TRIDC5BG032650
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 356328284 | 356335293 | - | gene:TRIDC5BG032650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 41,202.03 Da | 46.55 | 82.25 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 206 | 244 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 97 | 134 | 0.036 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 58 | 366 | 9.16E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 43 | 370 | 2.8E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 94 | 135 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 291 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 202 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 244 | 4.5E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 253 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 249 | 11.233774 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 231 | 245 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19430.1 | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | 0 |
| RefSeq | XP_037441061.1 | THO complex subunit 6-like [Triticum dicoccoides] | 0 |
| Q8L4M1 | THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LLL9 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG032650.