Basic Information
Locus ID:
gene:TRIDC5BG030580
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 332523764 | 332532526 | + | gene:TRIDC5BG030580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 38,963.70 Da | 29.70 | 81.14 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 267 | 320 | 1.0E-4 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 86 | 8.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 256 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 99 | 133 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 334 | 7.51E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 350 | 1.6E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 186 | 6.4E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 93 | 133 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 214 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 256 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 339 | 68.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 88 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 9.889235 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 100 | 138 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 224 | 258 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 100 | 142 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 224 | 265 | 11.243651 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 120 | 134 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 243 | 257 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 120 | 134 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 73 | 87 | 5.5E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56130.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | 0 |
| RefSeq | XP_037434078.1 | THO complex subunit 3-like isoform X3 [Triticum dicoccoides] | 0 |
| Q9FKT5 | THO complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=THO3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453KKE8 | ANAPC4_WD40 domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG030580.