Basic Information
Locus ID:
gene:TRIDC5BG029600
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 322716717 | 322725656 | + | gene:TRIDC5BG029600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 83,104.79 Da | 49.62 | 76.27 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14686 | bZIP | 736 | 774 | 0.00155703 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 40 | 68 | 0.0036 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 328 | 1.74E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 179 | 346 | 6.0E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 178 | 1.8E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 79 | 119 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 205 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 69 | 9.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 290 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 249 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 0.05 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 214 | 8.536777 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 455 | - | - |
| Coils | Coil | Coil | 746 | 773 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05970.1 | Transducin/WD40 repeat-like superfamily protein. a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis | 0 |
| RefSeq | XP_037440743.1 | protein NEDD1-like [Triticum dicoccoides] | 0 |
| B3H5K9 | Protein NEDD1 OS=Arabidopsis thaliana OX=3702 GN=NEDD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LKT3 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG029600.