Basic Information
Locus ID:
gene:TRIDC5BG028890
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Minichromosome loss protein, Mcl1, middle region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 312407687 | 312413408 | + | gene:TRIDC5BG028890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 108,476.01 Da | 44.43 | 76.56 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 15 | 308 | 3.81552E-41 | - |
| Pfam | PF12341 | Minichromosome loss protein, Mcl1, middle region | 440 | 723 | 6.2E-92 | IPR022100 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 279 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 210 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 320 | 1.32E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 326 | 1.7E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 18 | 144 | 4.8E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 239 | 279 | 4.9E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 47 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 187 | 7.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 63 | 103 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 236 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 145 | 6.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 288 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 70 | 112 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 188 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 196 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 282 | 11.286501 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 266 | 280 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 1007 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 921 | 939 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1007 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 424 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42660.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037440689.1 | WD repeat and HMG-box DNA-binding protein 1-like [Triticum dicoccoides] | 0 |
| F4JF14 | Protein ENHANCER OF LHP1 1 OS=Arabidopsis thaliana OX=3702 GN=EOL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LKF1 | Mcl1_mid domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG028890.