Basic Information
Locus ID:
gene:TRIDC5BG024410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 264521133 | 264530601 | - | gene:TRIDC5BG024410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 55,827.52 Da | 44.41 | 75.89 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 381 | 419 | 0.011 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 71 | 137 | 5.2E-9 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 289 | 323 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 162 | 480 | 1.0E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 73 | 488 | 2.8E-99 | IPR015943 |
| SMART | SM00320 | WD40_4 | 379 | 419 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 324 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 278 | 4.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 214 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 369 | 0.036 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 326 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 386 | 421 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 278 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 326 | 10.07378 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 386 | 428 | 11.912015 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19540.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_044392916.1 | protein HEAT STRESS TOLERANT DWD 1-like [Triticum aestivum] | 0 |
| Q9ZUN8 | Protein HEAT STRESS TOLERANT DWD 1 OS=Arabidopsis thaliana OX=3702 GN=HTD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LHW1 | CAF1C_H4-bd domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG024410.