Basic Information
Locus ID:
gene:TRIDC5BG023760-29606
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 258200364 | 258215131 | - | gene:TRIDC5BG023760-29606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 76,134.91 Da | 43.66 | 74.33 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16536 | RING-HC_RNF10 | 190 | 237 | 5.6572E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 190 | 236 | 6.6E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 178 | 242 | 1.39E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 251 | 1.8E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 236 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 236 | 11.043484 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 205 | 214 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 690 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26730.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037440333.1 | RING finger protein 10-like [Triticum dicoccoides] | 0 |
| Q32NQ8 | E3 ubiquitin-protein ligase RNF10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LJG7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG023760-29606.