Basic Information
Locus ID:
gene:TRIDC5BG023760-28909
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 258200366 | 258215356 | - | gene:TRIDC5BG023760-28909 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 82,191.49 Da | 47.24 | 70.53 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16536 | RING-HC_RNF10 | 248 | 295 | 7.52288E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 248 | 294 | 7.3E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 300 | 1.56E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 309 | 2.0E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 248 | 294 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 248 | 294 | 11.043484 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 263 | 272 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26730.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037440333.1 | RING finger protein 10-like [Triticum dicoccoides] | 0 |
| Q32NQ8 | E3 ubiquitin-protein ligase RNF10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LJG7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG023760-28909.