Basic Information
Locus ID:
gene:TRIDC5BG023130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 250881629 | 250891794 | + | gene:TRIDC5BG023130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 195,095.02 Da | 49.45 | 71.16 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 455 | 496 | 3.607E-15 | - |
| Pfam | PF15612 | WSTF, HB1, Itc1p, MBD9 motif 1 | 354 | 385 | 1.1E-4 | IPR028942 |
| Pfam | PF00628 | PHD-finger | 455 | 497 | 1.6E-7 | IPR019787 |
| Pfam | PF02791 | DDT domain | 240 | 294 | 3.3E-12 | IPR018501 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 449 | 501 | 3.54E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1435 | 1488 | 1.95E-10 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1725 | 1779 | 5.23E-5 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1425 | 1498 | 1.0E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 447 | 513 | 3.5E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1436 | 1484 | 1.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 454 | 497 | 2.2E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1732 | 1779 | 1.3 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1224 | 1273 | 20.0 | IPR001965 |
| SMART | SM00571 | testlast3 | 238 | 298 | 3.9E-12 | IPR018501 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 452 | 499 | 9.552299 | IPR019787 |
| ProSiteProfiles | PS50827 | DDT domain profile. | 238 | 298 | 15.081749 | IPR018501 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 455 | 496 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 997 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 212 | - | - |
| Coils | Coil | Coil | 377 | 397 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35210.2 | metalloendopeptidases;zinc ion binding;DNA binding. | 0 |
| RefSeq | XP_037440283.1 | DDT domain-containing protein PTM-like [Triticum dicoccoides] | 0 |
| F4JYC8 | DDT domain-containing protein PTM OS=Arabidopsis thaliana OX=3702 GN=PTM PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LJC4 | DDT domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG023130.