Basic Information
Locus ID:
gene:TRIDC5BG023040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 249013440 | 249016115 | + | gene:TRIDC5BG023040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 16,942.72 Da | 54.06 | 75.47 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 23 | 66 | 1.80539E-16 | - |
| Pfam | PF13639 | Ring finger domain | 23 | 66 | 4.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 72 | 1.51E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 75 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 65 | 3.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 66 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 133 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037440275.1 | RING-H2 finger protein ATL67-like [Triticum dicoccoides] | 0 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6LJI5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG023040.